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Chapter 5

05-01
Chemical Shift

05-02
Phosphorus MRS

05-03
MRS of Other Nuclei

Proton MRS
Carbon MRS
Fluorine MRS
Sodium MRS
Potassium MRS
05-04
Localized In Vivo MRS

Stimulated Echo MRS
Point-Resolved MRS
Image-Selected MRS
05-05
Chemical Shift Imaging


Chapter Five
Magnetic Resonance Spectroscopy

he beginning of NMR was spectroscopy – which, at those times, was not yet called "MRS". Today, for biological and medical applications one dis­tin­gu­ishes MRI (imaging) and MRS (spectroscopy).

MR spectroscopy has many useful applications, for instance checking if the wine in Figure 05-01 (or, if you rather prefer orange juice) that you want to drink has been adulterated or contaminated. This can be done with SNIF-NMR spec­tro­sco­py, which tells the specialist whether the juice (or wine) contains the su­gars of a pure fruit juice or of added sugars. Unfortunately, we are more in­te­res­ted in medical applications of MR spectroscopy.

Figure 05-01:
Old wine bottles, covered with spider webs — most likely they contain an excellent red wine, or perhaps not?


05-01 Chemical Shift

Until now we have assumed that everything resonates at the same resonance frequency in a given magnetic field. However, ¹H signals do not all come at the same frequency and so, for instance, the fat signal is generally shifted from its "correct" position.

Why does ¹H in water have a different resonance frequency to ¹H in fat?

Even though both protons are within the very large, uniform external mag­ne­tic field, they actually experience slightly different magnetic fields due to their chemical environments. Each proton is surrounded by other nuclei and elec­trons, all of which have a small magnetic field associated with them.

In fact it is the electrons in chemical bonds which are most significant in af­fec­ting the magnetic field experienced by a nucleus. Thus, a proton in water is most­ly influenced by elec­trons in H-O bonds, a similar nucleus in fat by electrons in H-C bonds. These differences in resonance frequency caused by the nuclei ex­peri­en­cing different chemical bonds are used for MR spectroscopy. The dif­fe­ren­ces themselves are known as the chemical shift, δ (Figure 05-02).

Figure 05-02:
Chemical shift (δ): a proton ¹H ) spectrum of tissues often reveals two clearly distinct peaks. One is assigned to tissue water, the other one to protons in lipids (in this case triglyceride). Data given in Hertz for 1.0 Tesla.


Chemical shift is simply a difference in frequency and is measured in Hz. The difference in frequency varies with magnetic field so that the chemical shift between water and fat is about 350 Hz at 2.35 Tesla, but about 700 Hz at 4.7 Tesla.

Fortunately, the change in the frequency difference is directly proportional to the change in the external magnetic field. If the chemical shift in Hz is divided by the basic resonance frequency of the nucleus in Hz, one obtains a number for the chemical shift, e.g., between water and fat, which is identical regardless of the strength of the applied magnetic field.

Chemical shifts are typically in the range of tens to hundreds of Hz, whereas the resonance frequencies are typically in the range of tens to hundreds of MHz. This makes the values of the chemical shifts rather small, so the numbers are always multiplied by one million and expressed in a parts-per-million scale, or ppm.

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